comp.freq {oncomodel}R Documentation

Compare Model Probabilities to Frequencies

Description

Compares the model probabilities of single alterations and pairs to the observed frequencies and shows scatterplots for the comparisons.

Usage

comp.freq(x, tree, p)

Arguments

x a binary data matrix with rows representing tumors and columns representing genetic alterations.
tree the tree in matrix format.
p a vector of edge parameters (model probabilities).

Examples

data(kidney)
comp.freq(kidney$x, kidney$tree, kidney$p)

[Package oncomodel version 0.8 Index]